AJR23358.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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[Homology]

Score

AJR23358.1

DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)

Predicted Functional Partners:

AJR23359.1

0.794

AJR25259.1

0.628

AJR26211.1

0.591

AJR24423.1

0.572

AJR25261.1

0.554

AJR23356.1

0.549

AJR25267.1

0.521

AJR26479.1

0.500

AJR25264.1

0.463

AJR24754.1

0.437

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23356.1	AJR23358.1	TZ53_05975	TZ53_05995	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AJR23356.1	AJR24423.1	TZ53_05975	TZ53_12480	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
AJR23356.1	AJR24754.1	TZ53_05975	TZ53_14495	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AJR23356.1	AJR25259.1	TZ53_05975	TZ53_17535	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJR23356.1	AJR25264.1	TZ53_05975	TZ53_17575	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR23356.1	AJR25267.1	TZ53_05975	TZ53_17590	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AJR23356.1	AJR26211.1	TZ53_05975	TZ53_05990	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AJR23356.1	AJR26479.1	TZ53_05975	TZ53_17560	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AJR23358.1	AJR23356.1	TZ53_05995	TZ53_05975	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AJR23358.1	AJR23359.1	TZ53_05995	TZ53_06000	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR23358.1	AJR24423.1	TZ53_05995	TZ53_12480	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.572
AJR23358.1	AJR24754.1	TZ53_05995	TZ53_14495	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR23358.1	AJR25259.1	TZ53_05995	TZ53_17535	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AJR23358.1	AJR25261.1	TZ53_05995	TZ53_17550	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AJR23358.1	AJR25264.1	TZ53_05995	TZ53_17575	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR23358.1	AJR25267.1	TZ53_05995	TZ53_17590	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AJR23358.1	AJR26211.1	TZ53_05995	TZ53_05990	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AJR23358.1	AJR26479.1	TZ53_05995	TZ53_17560	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AJR23359.1	AJR23358.1	TZ53_06000	TZ53_05995	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR24423.1	AJR23356.1	TZ53_12480	TZ53_05975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769