AJR23390.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

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[Homology]

Score

AJR23390.1

Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)

Predicted Functional Partners:

AJR23389.1

0.861

AJR23391.1

0.861

AJR25909.1

0.835

AJR23392.1

0.802

AJR26221.1

0.661

AJR22487.1

0.559

AJR24633.1

0.529

AJR25015.1

0.526

AJR23294.1

0.525

AJR24703.1

0.523

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22487.1	AJR23390.1	TZ53_00440	TZ53_06200	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AJR22487.1	AJR24633.1	TZ53_00440	TZ53_13750	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
AJR22487.1	AJR25909.1	TZ53_00440	TZ53_21340	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AJR23294.1	AJR23390.1	TZ53_05515	TZ53_06200	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
AJR23294.1	AJR24633.1	TZ53_05515	TZ53_13750	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
AJR23294.1	AJR25909.1	TZ53_05515	TZ53_21340	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AJR23389.1	AJR23390.1	TZ53_06195	TZ53_06200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR23389.1	AJR23391.1	TZ53_06195	TZ53_06205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR23389.1	AJR23392.1	TZ53_06195	TZ53_06210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferrisiderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
AJR23390.1	AJR22487.1	TZ53_06200	TZ53_00440	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AJR23390.1	AJR23294.1	TZ53_06200	TZ53_05515	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
AJR23390.1	AJR23389.1	TZ53_06200	TZ53_06195	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR23390.1	AJR23391.1	TZ53_06200	TZ53_06205	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AJR23390.1	AJR23392.1	TZ53_06200	TZ53_06210	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferrisiderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AJR23390.1	AJR24633.1	TZ53_06200	TZ53_13750	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AJR23390.1	AJR24703.1	TZ53_06200	TZ53_14185	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
AJR23390.1	AJR25015.1	TZ53_06200	TZ53_16050	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR23390.1	AJR25909.1	TZ53_06200	TZ53_21340	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
AJR23390.1	AJR26221.1	TZ53_06200	TZ53_06365	Iron-regulated membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
AJR23391.1	AJR23389.1	TZ53_06205	TZ53_06195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861