AJR26219.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR26219.1

Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)

Predicted Functional Partners:

AJR22547.1

0.919

AJR24686.1

0.909

AJR24687.1

0.908

AJR25763.1

0.906

AJR23899.1

0.902

AJR26332.1

0.902

AJR24699.1

0.886

AJR24768.1

0.881

AJR25702.1

0.881

AJR22869.1

0.851

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22547.1	AJR22869.1	TZ53_00840	TZ53_02885	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR22547.1	AJR23899.1	TZ53_00840	TZ53_09350	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22547.1	AJR24686.1	TZ53_00840	TZ53_14065	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR22547.1	AJR24687.1	TZ53_00840	TZ53_14070	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR22547.1	AJR24699.1	TZ53_00840	TZ53_14155	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22547.1	AJR24768.1	TZ53_00840	TZ53_14585	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22547.1	AJR25702.1	TZ53_00840	TZ53_20110	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR22547.1	AJR25763.1	TZ53_00840	TZ53_20460	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phyllosphere-induced regulator PhyR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
AJR22547.1	AJR26219.1	TZ53_00840	TZ53_06335	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJR22547.1	AJR26332.1	TZ53_00840	TZ53_11245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR22869.1	AJR22547.1	TZ53_02885	TZ53_00840	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR22869.1	AJR23899.1	TZ53_02885	TZ53_09350	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AJR22869.1	AJR24686.1	TZ53_02885	TZ53_14065	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR22869.1	AJR24687.1	TZ53_02885	TZ53_14070	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
AJR22869.1	AJR24699.1	TZ53_02885	TZ53_14155	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
AJR22869.1	AJR24768.1	TZ53_02885	TZ53_14585	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
AJR22869.1	AJR25702.1	TZ53_02885	TZ53_20110	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR22869.1	AJR25763.1	TZ53_02885	TZ53_20460	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phyllosphere-induced regulator PhyR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR22869.1	AJR26219.1	TZ53_02885	TZ53_06335	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AJR22869.1	AJR26332.1	TZ53_02885	TZ53_11245	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749