AJR23475.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR23475.1

SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)

Predicted Functional Partners:

AJR23476.1

0.995

AJR23477.1

0.995

AJR22914.1

0.507

AJR23474.1

0.466

AJR23551.1

0.463

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22914.1	AJR23475.1	TZ53_03180	TZ53_06770	S1/P1 Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AJR23474.1	AJR23475.1	TZ53_06765	TZ53_06770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR23474.1	AJR23476.1	TZ53_06765	TZ53_06775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	0.455
AJR23474.1	AJR23477.1	TZ53_06765	TZ53_06780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJR23475.1	AJR22914.1	TZ53_06770	TZ53_03180	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	S1/P1 Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AJR23475.1	AJR23474.1	TZ53_06770	TZ53_06765	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR23475.1	AJR23476.1	TZ53_06770	TZ53_06775	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	0.995
AJR23475.1	AJR23477.1	TZ53_06770	TZ53_06780	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJR23475.1	AJR23551.1	TZ53_06770	TZ53_07285	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR23476.1	AJR23474.1	TZ53_06775	TZ53_06765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AJR23476.1	AJR23475.1	TZ53_06775	TZ53_06770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJR23476.1	AJR23477.1	TZ53_06775	TZ53_06780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJR23476.1	AJR23551.1	TZ53_06775	TZ53_07285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AJR23477.1	AJR23474.1	TZ53_06780	TZ53_06765	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJR23477.1	AJR23475.1	TZ53_06780	TZ53_06770	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AJR23477.1	AJR23476.1	TZ53_06780	TZ53_06775	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	0.995
AJR23477.1	AJR23551.1	TZ53_06780	TZ53_07285	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
AJR23551.1	AJR23475.1	TZ53_07285	TZ53_06770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	SpoVR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR23551.1	AJR23476.1	TZ53_07285	TZ53_06775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family.	0.479
AJR23551.1	AJR23477.1	TZ53_07285	TZ53_06780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454