AJR23489.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23489.1

Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)

Predicted Functional Partners:

AJR23487.1

0.877

cobS

0.860

cobT

0.860

AJR23485.1

0.856

AJR23483.1

0.820

cobD

0.820

AJR25573.1

0.584

AJR23469.1

0.498

AJR23461.1

0.486

AJR22607.1

0.468

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22607.1	AJR23469.1	TZ53_01205	TZ53_06740	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AJR22607.1	AJR23489.1	TZ53_01205	TZ53_06840	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AJR23461.1	AJR23469.1	TZ53_06695	TZ53_06740	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJR23461.1	AJR23483.1	TZ53_06695	TZ53_06810	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	0.429
AJR23461.1	AJR23485.1	TZ53_06695	TZ53_06820	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJR23461.1	AJR23489.1	TZ53_06695	TZ53_06840	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJR23461.1	cobD	TZ53_06695	TZ53_06815	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	0.442
AJR23469.1	AJR22607.1	TZ53_06740	TZ53_01205	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AJR23469.1	AJR23461.1	TZ53_06740	TZ53_06695	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJR23469.1	AJR23483.1	TZ53_06740	TZ53_06810	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	0.689
AJR23469.1	AJR23485.1	TZ53_06740	TZ53_06820	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
AJR23469.1	AJR23489.1	TZ53_06740	TZ53_06840	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AJR23469.1	cobD	TZ53_06740	TZ53_06815	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.	0.811
AJR23469.1	cobS	TZ53_06740	TZ53_06825	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	0.738
AJR23469.1	cobT	TZ53_06740	TZ53_06835	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.701
AJR23483.1	AJR23461.1	TZ53_06810	TZ53_06695	Cobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJR23483.1	AJR23469.1	TZ53_06810	TZ53_06740	Cobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AJR23483.1	AJR23485.1	TZ53_06810	TZ53_06820	Cobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR23483.1	AJR23487.1	TZ53_06810	TZ53_06830	Cobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AJR23483.1	AJR23489.1	TZ53_06810	TZ53_06840	Cobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820