AJR23547.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR23547.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)

Predicted Functional Partners:

AJR23548.1

0.860

AJR23546.1

0.552

AJR23912.1

0.460

tolB

0.432

AJR24739.1

0.417

AJR24985.1

0.417

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23546.1	AJR23547.1	TZ53_07230	TZ53_07235	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJR23546.1	AJR23548.1	TZ53_07230	TZ53_07240	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJR23547.1	AJR23546.1	TZ53_07235	TZ53_07230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJR23547.1	AJR23548.1	TZ53_07235	TZ53_07240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR23547.1	AJR23912.1	TZ53_07235	TZ53_09430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AJR23547.1	AJR24739.1	TZ53_07235	TZ53_14395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR23547.1	AJR24985.1	TZ53_07235	TZ53_15890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR23547.1	tolB	TZ53_07235	TZ53_03455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.432
AJR23548.1	AJR23546.1	TZ53_07240	TZ53_07230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
AJR23548.1	AJR23547.1	TZ53_07240	TZ53_07235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR23912.1	AJR23547.1	TZ53_09430	TZ53_07235	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AJR24739.1	AJR23547.1	TZ53_14395	TZ53_07235	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR24739.1	AJR24985.1	TZ53_14395	TZ53_15890	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
AJR24739.1	tolB	TZ53_14395	TZ53_03455	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.532
AJR24985.1	AJR23547.1	TZ53_15890	TZ53_07235	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR24985.1	AJR24739.1	TZ53_15890	TZ53_14395	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
tolB	AJR23547.1	TZ53_03455	TZ53_07235	Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
tolB	AJR24739.1	TZ53_03455	TZ53_14395	Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532