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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR26245.1Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
AJR23549.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
AJR23552.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.492
AJR23550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.486
AJR23551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
AJR26559.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.455
AJR25931.1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.443
AJR23286.1
Pyruvate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.428
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
  
 0.423
AJR25139.1
Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.418
AJR25678.1
UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.417
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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