Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJR26245.1Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
    
  0.676
AJR23549.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
AJR23552.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.497
AJR23550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.486
AJR23551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
  
 0.448
AJR25931.1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.427
AJR26559.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.418
AJR22769.1
Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.414
AJR25139.1
Pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.414
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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