AJR23574.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23574.1

Fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)

Predicted Functional Partners:

AJR25190.1

0.710

AJR23334.1

0.697

AJR23117.1

0.690

AJR25845.1

0.690

rplF

0.682

AJR25615.1

0.614

AJR25616.1

0.603

AJR23065.1

0.548

AJR23074.1

0.548

AJR23076.1

0.548

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23065.1	AJR23076.1	TZ53_04095	TZ53_04150	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AJR23065.1	AJR23117.1	TZ53_04095	TZ53_04395	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR23065.1	AJR23574.1	TZ53_04095	TZ53_07450	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23065.1	AJR25190.1	TZ53_04095	TZ53_17095	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
AJR23065.1	AJR25845.1	TZ53_04095	TZ53_20955	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23074.1	AJR23076.1	TZ53_04140	TZ53_04150	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AJR23074.1	AJR23117.1	TZ53_04140	TZ53_04395	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
AJR23074.1	AJR23574.1	TZ53_04140	TZ53_07450	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23074.1	AJR25190.1	TZ53_04140	TZ53_17095	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23074.1	AJR25616.1	TZ53_04140	TZ53_19635	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
AJR23074.1	AJR25845.1	TZ53_04140	TZ53_20955	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23076.1	AJR23065.1	TZ53_04150	TZ53_04095	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AJR23076.1	AJR23074.1	TZ53_04150	TZ53_04140	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AJR23076.1	AJR23117.1	TZ53_04150	TZ53_04395	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
AJR23076.1	AJR23574.1	TZ53_04150	TZ53_07450	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23076.1	AJR25190.1	TZ53_04150	TZ53_17095	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23076.1	AJR25615.1	TZ53_04150	TZ53_19630	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
AJR23076.1	AJR25845.1	TZ53_04150	TZ53_20955	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR23117.1	AJR23065.1	TZ53_04395	TZ53_04095	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR23117.1	AJR23074.1	TZ53_04395	TZ53_04140	AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670