Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJR23593.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)    
Predicted Functional Partners:
AJR23633.1
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.941
AJR23634.1
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.932
AJR24320.1
NagC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.806
AJR22782.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.804
AJR24890.1
Peptidase A24; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.796
AJR23507.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.784
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
   0.784
AJR23508.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.782
AJR23594.1
Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
AJR24883.1
General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.778
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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