STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR23606.1Haloperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)    
Predicted Functional Partners:
AJR23605.1
Chloroperoxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.729
AJR23607.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.632
AJR23608.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.471
AJR23149.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.442
AJR26044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.442
AJR25052.1
Pilus assembly protein TadD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.437
AJR22413.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.410
AJR26279.1
2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.400
AJR26280.1
4-oxalocrotonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.400
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.