AJR23623.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR23623.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)

Predicted Functional Partners:

AJR23621.1

0.828

AJR23622.1

0.828

AJR24699.1

0.747

AJR23620.1

0.652

AJR25486.1

0.636

AJR24768.1

0.627

AJR26350.1

0.576

AJR22547.1

0.570

AJR22802.1

0.559

AJR23619.1

0.555

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22547.1	AJR22802.1	TZ53_00840	TZ53_02470	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AJR22547.1	AJR23620.1	TZ53_00840	TZ53_07720	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR22547.1	AJR23623.1	TZ53_00840	TZ53_07735	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJR22547.1	AJR24699.1	TZ53_00840	TZ53_14155	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22547.1	AJR24768.1	TZ53_00840	TZ53_14585	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJR22547.1	AJR25486.1	TZ53_00840	TZ53_18855	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJR22547.1	AJR26350.1	TZ53_00840	TZ53_11930	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR22802.1	AJR22547.1	TZ53_02470	TZ53_00840	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AJR22802.1	AJR23620.1	TZ53_02470	TZ53_07720	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AJR22802.1	AJR23623.1	TZ53_02470	TZ53_07735	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AJR22802.1	AJR24699.1	TZ53_02470	TZ53_14155	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22802.1	AJR24768.1	TZ53_02470	TZ53_14585	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR22802.1	AJR26350.1	TZ53_02470	TZ53_11930	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJR23619.1	AJR23620.1	TZ53_07715	TZ53_07720	Circadian clock protein KaiC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AJR23619.1	AJR23621.1	TZ53_07715	TZ53_07725	Circadian clock protein KaiC; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AJR23619.1	AJR23622.1	TZ53_07715	TZ53_07730	Circadian clock protein KaiC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
AJR23619.1	AJR23623.1	TZ53_07715	TZ53_07735	Circadian clock protein KaiC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AJR23619.1	AJR24699.1	TZ53_07715	TZ53_14155	Circadian clock protein KaiC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR23620.1	AJR22547.1	TZ53_07720	TZ53_00840	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJR23620.1	AJR22802.1	TZ53_07720	TZ53_02470	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762