Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR23626.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (842 aa)    
Predicted Functional Partners:
AJR26253.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.982
AJR23627.1
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.961
AJR24978.1
Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.795
AJR26172.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.664
lolD
ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
  
 0.500
AJR24979.1
Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.460
AJR23625.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.456
AJR23676.1
Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
AJR22981.1
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.438
AJR24365.1
Lipolytic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.438
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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