AJR23629.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJR23629.1

Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)

Predicted Functional Partners:

AJR23631.1

0.996

AJR23633.1

0.994

AJR23634.1

0.993

AJR23630.1

0.990

AJR23632.1

0.935

AJR23628.1

0.867

AJR22780.1

0.727

AJR22781.1

0.714

AJR22782.1

0.714

AJR25924.1

0.601

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22780.1	AJR22781.1	TZ53_02345	TZ53_02350	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22780.1	AJR22782.1	TZ53_02345	TZ53_02355	Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22780.1	AJR23629.1	TZ53_02345	TZ53_07780	Derived by automated computational analysis using gene prediction method: Protein Homology.	Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AJR22780.1	AJR23631.1	TZ53_02345	TZ53_07790	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.846
AJR22780.1	AJR23633.1	TZ53_02345	TZ53_07800	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
AJR22780.1	AJR23634.1	TZ53_02345	TZ53_07805	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.867
AJR22780.1	AJR25924.1	TZ53_02345	TZ53_21425	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJR22781.1	AJR22780.1	TZ53_02350	TZ53_02345	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22781.1	AJR22782.1	TZ53_02350	TZ53_02355	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22781.1	AJR23629.1	TZ53_02350	TZ53_07780	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AJR22781.1	AJR23631.1	TZ53_02350	TZ53_07790	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.952
AJR22781.1	AJR23633.1	TZ53_02350	TZ53_07800	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR22781.1	AJR23634.1	TZ53_02350	TZ53_07805	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.908
AJR22781.1	AJR25924.1	TZ53_02350	TZ53_21425	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AJR22782.1	AJR22780.1	TZ53_02355	TZ53_02345	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22782.1	AJR22781.1	TZ53_02355	TZ53_02350	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
AJR22782.1	AJR23629.1	TZ53_02355	TZ53_07780	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AJR22782.1	AJR23631.1	TZ53_02355	TZ53_07790	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.982
AJR22782.1	AJR23633.1	TZ53_02355	TZ53_07800	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR22782.1	AJR23634.1	TZ53_02355	TZ53_07805	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.949