AJR23629.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23629.1

Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)

Predicted Functional Partners:

AJR23631.1

0.996

AJR23633.1

0.993

AJR23634.1

0.990

AJR23630.1

0.988

AJR23632.1

0.930

AJR23628.1

0.833

AJR23597.1

0.785

AJR23742.1

0.785

AJR26291.1

0.785

AJR22780.1

0.711

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22780.1	AJR23597.1	TZ53_02345	TZ53_07595	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR22780.1	AJR23629.1	TZ53_02345	TZ53_07780	Derived by automated computational analysis using gene prediction method: Protein Homology.	Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AJR22780.1	AJR23631.1	TZ53_02345	TZ53_07790	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.855
AJR22780.1	AJR23633.1	TZ53_02345	TZ53_07800	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJR22780.1	AJR23634.1	TZ53_02345	TZ53_07805	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.756
AJR22780.1	AJR23742.1	TZ53_02345	TZ53_08435	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR22780.1	AJR26291.1	TZ53_02345	TZ53_09445	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR23597.1	AJR22780.1	TZ53_07595	TZ53_02345	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AJR23597.1	AJR23629.1	TZ53_07595	TZ53_07780	Derived by automated computational analysis using gene prediction method: Protein Homology.	Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJR23597.1	AJR23630.1	TZ53_07595	TZ53_07785	Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AJR23597.1	AJR23632.1	TZ53_07595	TZ53_07795	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cbb3-type cytochrome oxidase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJR23597.1	AJR23633.1	TZ53_07595	TZ53_07800	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AJR23597.1	AJR23634.1	TZ53_07595	TZ53_07805	Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.897
AJR23628.1	AJR23629.1	TZ53_07770	TZ53_07780	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
AJR23628.1	AJR23630.1	TZ53_07770	TZ53_07785	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR23628.1	AJR23631.1	TZ53_07770	TZ53_07790	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.762
AJR23628.1	AJR23632.1	TZ53_07770	TZ53_07795	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cbb3-type cytochrome oxidase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
AJR23628.1	AJR23633.1	TZ53_07770	TZ53_07800	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AJR23628.1	AJR23634.1	TZ53_07770	TZ53_07805	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.	0.731
AJR23629.1	AJR22780.1	TZ53_07780	TZ53_02345	Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711