Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR23632.1Cbb3-type cytochrome oxidase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa)    
Predicted Functional Partners:
AJR23631.1
Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.995
AJR23633.1
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.993
AJR23630.1
Nitrogen fixation protein FixG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.989
AJR23634.1
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.986
AJR23629.1
Integral membrane protein linked to a cation pump; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.935
AJR23597.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.595
AJR23742.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.595
AJR26291.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.595
AJR23593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.570
AJR23628.1
Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.567
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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