Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJR23654.1Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
AJR23656.1
Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.997
AJR23655.1
Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.
 
  
 0.987
AJR23850.1
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.934
AJR23856.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.903
AJR23854.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.902
AJR23855.1
Phenol 2-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.902
AJR23857.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.902
AJR23852.1
Toluene monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.901
AJR23853.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.901
AJR23240.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.758
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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