STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR23658.1Acetamidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)    
Predicted Functional Partners:
AJR23885.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.917
AJR22533.1
Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.905
AJR23883.1
ATP synthase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.905
glnA
Forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.902
AJR26081.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AJR26082.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
  0.900
AJR23689.1
Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AJR23884.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AJR26285.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
  0.900
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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