AJR23675.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

AJR23675.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)

Predicted Functional Partners:

AJR23676.1

0.639

AJR23677.1

0.635

AJR25470.1

0.567

AJR24345.1

0.541

AJR24327.1

0.484

AJR23148.1

0.447

fixJ

0.419

AJR25325.1

0.408

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23148.1	AJR23675.1	TZ53_04565	TZ53_08065	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR23148.1	AJR24327.1	TZ53_04565	TZ53_11905	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AJR23148.1	AJR24345.1	TZ53_04565	TZ53_12000	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
AJR23148.1	AJR25470.1	TZ53_04565	TZ53_18765	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJR23675.1	AJR23148.1	TZ53_08065	TZ53_04565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR23675.1	AJR23676.1	TZ53_08065	TZ53_08070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AJR23675.1	AJR23677.1	TZ53_08065	TZ53_08075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AJR23675.1	AJR24327.1	TZ53_08065	TZ53_11905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
AJR23675.1	AJR24345.1	TZ53_08065	TZ53_12000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AJR23675.1	AJR25325.1	TZ53_08065	TZ53_17950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AJR23675.1	AJR25470.1	TZ53_08065	TZ53_18765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
AJR23675.1	fixJ	TZ53_08065	TZ53_08080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AJR23676.1	AJR23675.1	TZ53_08070	TZ53_08065	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AJR23676.1	AJR23677.1	TZ53_08070	TZ53_08075	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
AJR23676.1	fixJ	TZ53_08070	TZ53_08080	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
AJR23677.1	AJR23675.1	TZ53_08075	TZ53_08065	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
AJR23677.1	AJR23676.1	TZ53_08075	TZ53_08070	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
AJR23677.1	fixJ	TZ53_08075	TZ53_08080	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJR24327.1	AJR23148.1	TZ53_11905	TZ53_04565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AJR24327.1	AJR23675.1	TZ53_11905	TZ53_08065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484