AJR23696.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23696.1

Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)

Predicted Functional Partners:

AJR23697.1

0.971

AJR23698.1

0.970

AJR23694.1

0.953

AJR23693.1

0.923

AJR23695.1

0.920

AJR24797.1

0.875

AJR25050.1

0.875

AJR25051.1

0.874

AJR24796.1

0.873

AJR23701.1

0.866

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23693.1	AJR23694.1	TZ53_08160	TZ53_08165	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	0.917
AJR23693.1	AJR23695.1	TZ53_08160	TZ53_08170	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AJR23693.1	AJR23696.1	TZ53_08160	TZ53_08175	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AJR23693.1	AJR23697.1	TZ53_08160	TZ53_08180	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR23693.1	AJR23698.1	TZ53_08160	TZ53_08185	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR23693.1	AJR23701.1	TZ53_08160	TZ53_08200	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AJR23693.1	AJR24796.1	TZ53_08160	TZ53_14765	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AJR23693.1	AJR24797.1	TZ53_08160	TZ53_14770	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AJR23693.1	AJR25050.1	TZ53_08160	TZ53_16275	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
AJR23693.1	AJR25051.1	TZ53_08160	TZ53_16280	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AJR23694.1	AJR23693.1	TZ53_08165	TZ53_08160	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJR23694.1	AJR23695.1	TZ53_08165	TZ53_08170	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJR23694.1	AJR23696.1	TZ53_08165	TZ53_08175	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR23694.1	AJR23697.1	TZ53_08165	TZ53_08180	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJR23694.1	AJR23698.1	TZ53_08165	TZ53_08185	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AJR23694.1	AJR23701.1	TZ53_08165	TZ53_08200	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AJR23694.1	AJR24796.1	TZ53_08165	TZ53_14765	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
AJR23694.1	AJR24797.1	TZ53_08165	TZ53_14770	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AJR23694.1	AJR25050.1	TZ53_08165	TZ53_16275	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJR23694.1	AJR25051.1	TZ53_08165	TZ53_16280	Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.	Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815