Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJR23699.1Pilus assembly protein TadD; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
AJR23695.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.968
AJR23701.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.964
AJR23698.1
Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
AJR23694.1
Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
 
 
 0.925
AJR23697.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.916
AJR23696.1
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.832
AJR23693.1
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.790
AJR23700.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
AJR23703.1
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.682
AJR24796.1
Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.617
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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