Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
AJR23706.1dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (736 aa)    
Predicted Functional Partners:
AJR25950.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
AJR25949.1
CDP-paratose 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
AJR23705.1
UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
AJR25760.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.902
AJR23930.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.839
AJR22732.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.811
AJR22937.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.811
AJR23367.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.811
AJR24285.1
Protein CapI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.811
AJR24663.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.811
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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