AJR23752.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJR23752.1

Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)

Predicted Functional Partners:

AJR23753.1

0.966

AJR23754.1

0.925

AJR23742.1

0.795

AJR23741.1

0.782

AJR23740.1

0.779

AJR23743.1

0.776

AJR26457.1

0.645

AJR23733.1

0.641

AJR25179.1

0.616

AJR25189.1

0.609

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23733.1	AJR23740.1	TZ53_08385	TZ53_08425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AJR23733.1	AJR23741.1	TZ53_08385	TZ53_08430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AJR23733.1	AJR23742.1	TZ53_08385	TZ53_08435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJR23733.1	AJR23743.1	TZ53_08385	TZ53_08440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AJR23733.1	AJR23752.1	TZ53_08385	TZ53_08485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
AJR23733.1	AJR23753.1	TZ53_08385	TZ53_08490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
AJR23733.1	AJR23754.1	TZ53_08385	TZ53_08495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJR23733.1	AJR25179.1	TZ53_08385	TZ53_17030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AJR23733.1	AJR25189.1	TZ53_08385	TZ53_17090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AJR23733.1	AJR26457.1	TZ53_08385	TZ53_16615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AJR23740.1	AJR23733.1	TZ53_08425	TZ53_08385	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AJR23740.1	AJR23741.1	TZ53_08425	TZ53_08430	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AJR23740.1	AJR23742.1	TZ53_08425	TZ53_08435	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AJR23740.1	AJR23743.1	TZ53_08425	TZ53_08440	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
AJR23740.1	AJR23752.1	TZ53_08425	TZ53_08485	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AJR23740.1	AJR23753.1	TZ53_08425	TZ53_08490	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AJR23740.1	AJR23754.1	TZ53_08425	TZ53_08495	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
AJR23741.1	AJR23733.1	TZ53_08430	TZ53_08385	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AJR23741.1	AJR23740.1	TZ53_08430	TZ53_08425	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AJR23741.1	AJR23742.1	TZ53_08430	TZ53_08435	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969