AJR23780.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR23780.1

Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)

Predicted Functional Partners:

AJR25959.1

0.662

acpP

0.574

AJR23781.1

0.555

AJR23204.1

0.542

AJR26273.1

0.522

AJR25187.1

0.517

AJR22545.1

0.515

AJR23775.1

0.515

AJR23940.1

0.515

AJR24921.1

0.515

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22545.1	AJR23204.1	TZ53_00830	TZ53_04920	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR22545.1	AJR23780.1	TZ53_00830	TZ53_08650	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR22545.1	AJR23940.1	TZ53_00830	TZ53_09595	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22545.1	AJR24921.1	TZ53_00830	TZ53_15520	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR22545.1	AJR25187.1	TZ53_00830	TZ53_17075	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
AJR22545.1	acpP	TZ53_00830	TZ53_15870	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.932
AJR23204.1	AJR22545.1	TZ53_04920	TZ53_00830	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR23204.1	AJR23775.1	TZ53_04920	TZ53_08625	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR23204.1	AJR23780.1	TZ53_04920	TZ53_08650	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AJR23204.1	AJR23940.1	TZ53_04920	TZ53_09595	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR23204.1	AJR24921.1	TZ53_04920	TZ53_15520	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR23204.1	AJR25959.1	TZ53_04920	TZ53_21635	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJR23204.1	acpP	TZ53_04920	TZ53_15870	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.646
AJR23775.1	AJR23204.1	TZ53_08625	TZ53_04920	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AJR23775.1	AJR23780.1	TZ53_08625	TZ53_08650	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR23775.1	AJR25187.1	TZ53_08625	TZ53_17075	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
AJR23780.1	AJR22545.1	TZ53_08650	TZ53_00830	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphopantetheine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR23780.1	AJR23204.1	TZ53_08650	TZ53_04920	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AJR23780.1	AJR23775.1	TZ53_08650	TZ53_08625	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
AJR23780.1	AJR23781.1	TZ53_08650	TZ53_08655	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555