AJR23799.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

AJR23799.1

Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)

Predicted Functional Partners:

AJR23798.1

0.848

rplP

0.802

AJR23800.1

0.592

AJR23801.1

0.435

AJR23797.1

0.427

argS

0.414

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23797.1	AJR23798.1	TZ53_08755	TZ53_08760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	0.434
AJR23797.1	AJR23799.1	TZ53_08755	TZ53_08765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AJR23798.1	AJR23797.1	TZ53_08760	TZ53_08755	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJR23798.1	AJR23799.1	TZ53_08760	TZ53_08765	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AJR23798.1	AJR23800.1	TZ53_08760	TZ53_08770	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AJR23798.1	AJR23801.1	TZ53_08760	TZ53_08775	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AJR23799.1	AJR23797.1	TZ53_08765	TZ53_08755	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AJR23799.1	AJR23798.1	TZ53_08765	TZ53_08760	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	0.848
AJR23799.1	AJR23800.1	TZ53_08765	TZ53_08770	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AJR23799.1	AJR23801.1	TZ53_08765	TZ53_08775	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJR23799.1	argS	TZ53_08765	TZ53_01035	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	arginyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJR23799.1	rplP	TZ53_08765	TZ53_11335	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.802
AJR23800.1	AJR23798.1	TZ53_08770	TZ53_08760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	0.592
AJR23800.1	AJR23799.1	TZ53_08770	TZ53_08765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
AJR23800.1	AJR23801.1	TZ53_08770	TZ53_08775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AJR23801.1	AJR23798.1	TZ53_08775	TZ53_08760	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.	0.455
AJR23801.1	AJR23799.1	TZ53_08775	TZ53_08765	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJR23801.1	AJR23800.1	TZ53_08775	TZ53_08770	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
argS	AJR23799.1	TZ53_01035	TZ53_08765	arginyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
rplP	AJR23799.1	TZ53_11335	TZ53_08765	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802