AJR23802.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23802.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)

Predicted Functional Partners:

AJR23179.1

0.664

AJR24068.1

0.579

AJR22555.1

0.548

AJR24719.1

0.528

AJR22461.1

0.497

AJR24423.1

0.496

AJR23801.1

0.487

AJR22954.1

0.486

AJR24836.1

0.477

AJR24360.1

0.467

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22461.1	AJR22555.1	TZ53_00295	TZ53_00885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AJR22461.1	AJR22954.1	TZ53_00295	TZ53_03415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AJR22461.1	AJR23179.1	TZ53_00295	TZ53_04755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AJR22461.1	AJR23802.1	TZ53_00295	TZ53_08780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJR22461.1	AJR24068.1	TZ53_00295	TZ53_10375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AJR22461.1	AJR24360.1	TZ53_00295	TZ53_12085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR22555.1	AJR22461.1	TZ53_00885	TZ53_00295	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AJR22555.1	AJR22954.1	TZ53_00885	TZ53_03415	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AJR22555.1	AJR23179.1	TZ53_00885	TZ53_04755	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AJR22555.1	AJR23802.1	TZ53_00885	TZ53_08780	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AJR22555.1	AJR24068.1	TZ53_00885	TZ53_10375	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AJR22555.1	AJR24360.1	TZ53_00885	TZ53_12085	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR22555.1	AJR24719.1	TZ53_00885	TZ53_14280	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkaline phosphatase; Alkaline phosphatase with broad substrate specificity.	0.638
AJR22954.1	AJR22461.1	TZ53_03415	TZ53_00295	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AJR22954.1	AJR22555.1	TZ53_03415	TZ53_00885	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AJR22954.1	AJR23179.1	TZ53_03415	TZ53_04755	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.585
AJR22954.1	AJR23802.1	TZ53_03415	TZ53_08780	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJR22954.1	AJR24068.1	TZ53_03415	TZ53_10375	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AJR23179.1	AJR22461.1	TZ53_04755	TZ53_00295	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AJR23179.1	AJR22555.1	TZ53_04755	TZ53_00885	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666