Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR26275.1Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (480 aa)    
Predicted Functional Partners:
AJR26453.1
Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.899
AJR25854.1
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.899
AJR23806.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.829
AJR23804.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.787
AJR23807.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.769
AJR26147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.767
AJR22534.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.762
AJR25454.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.749
AJR23983.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.747
AJR23449.1
Hemin transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.746
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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