AJR23832.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJR23832.1

Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)

Predicted Functional Partners:

AJR23833.1

0.979

AJR25013.1

0.976

AJR23828.1

0.955

ssuB

0.953

AJR25401.1

0.930

AJR25014.1

0.925

AJR23819.1

0.921

AJR26283.1

0.919

AJR24958.1

0.904

AJR24960.1

0.904

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23819.1	AJR23828.1	TZ53_08875	TZ53_08930	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AJR23819.1	AJR23832.1	TZ53_08875	TZ53_08950	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AJR23819.1	AJR23833.1	TZ53_08875	TZ53_08955	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJR23819.1	AJR25013.1	TZ53_08875	TZ53_16040	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AJR23819.1	AJR25014.1	TZ53_08875	TZ53_16045	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AJR23819.1	AJR25401.1	TZ53_08875	TZ53_18360	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJR23819.1	AJR26283.1	TZ53_08875	TZ53_09190	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR23819.1	ssuB	TZ53_08875	TZ53_08935	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.989
AJR23828.1	AJR23819.1	TZ53_08930	TZ53_08875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AJR23828.1	AJR23832.1	TZ53_08930	TZ53_08950	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR23828.1	AJR23833.1	TZ53_08930	TZ53_08955	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJR23828.1	AJR25013.1	TZ53_08930	TZ53_16040	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
AJR23828.1	AJR25014.1	TZ53_08930	TZ53_16045	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
AJR23828.1	AJR25401.1	TZ53_08930	TZ53_18360	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AJR23828.1	AJR26283.1	TZ53_08930	TZ53_09190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AJR23828.1	ssuB	TZ53_08930	TZ53_08935	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.998
AJR23832.1	AJR23819.1	TZ53_08950	TZ53_08875	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AJR23832.1	AJR23828.1	TZ53_08950	TZ53_08930	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AJR23832.1	AJR23833.1	TZ53_08950	TZ53_08955	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJR23832.1	AJR24958.1	TZ53_08950	TZ53_15725	Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.	0.904