AJR23840.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR23840.1

Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)

Predicted Functional Partners:

AJR23677.1

0.811

AJR23943.1

0.811

AJR24131.1

0.808

AJR22547.1

0.786

AJR24699.1

0.764

AJR24768.1

0.764

AJR23620.1

0.755

AJR22876.1

0.728

AJR26127.1

0.717

AJR23899.1

0.690

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22547.1	AJR23620.1	TZ53_00840	TZ53_07720	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22547.1	AJR23677.1	TZ53_00840	TZ53_08075	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJR22547.1	AJR23840.1	TZ53_00840	TZ53_08995	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AJR22547.1	AJR23899.1	TZ53_00840	TZ53_09350	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22547.1	AJR23943.1	TZ53_00840	TZ53_09615	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJR22547.1	AJR24131.1	TZ53_00840	TZ53_10720	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.534
AJR22547.1	AJR24699.1	TZ53_00840	TZ53_14155	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22547.1	AJR24768.1	TZ53_00840	TZ53_14585	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22547.1	AJR26127.1	TZ53_00840	TZ53_02890	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJR22876.1	AJR23840.1	TZ53_02930	TZ53_08995	Polyphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AJR23620.1	AJR22547.1	TZ53_07720	TZ53_00840	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23620.1	AJR23677.1	TZ53_07720	TZ53_08075	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AJR23620.1	AJR23840.1	TZ53_07720	TZ53_08995	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
AJR23620.1	AJR23899.1	TZ53_07720	TZ53_09350	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR23620.1	AJR23943.1	TZ53_07720	TZ53_09615	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJR23620.1	AJR24131.1	TZ53_07720	TZ53_10720	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.550
AJR23620.1	AJR24699.1	TZ53_07720	TZ53_14155	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23620.1	AJR24768.1	TZ53_07720	TZ53_14585	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23620.1	AJR26127.1	TZ53_07720	TZ53_02890	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AJR23677.1	AJR22547.1	TZ53_08075	TZ53_00840	Nitrogen fixation protein FixL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981