STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR23858.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)    
Predicted Functional Partners:
AJR24131.1
RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.788
AJR24699.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.731
AJR23857.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.728
AJR23856.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.695
AJR24768.1
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.681
AJR23854.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.650
AJR26029.1
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.644
AJR23855.1
Phenol 2-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.642
AJR23853.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.633
AJR25486.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.628
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.