Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJR26285.1Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)    
Predicted Functional Partners:
AJR23885.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AJR23883.1
ATP synthase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
AJR23884.1
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
fdhD
Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.929
AJR23425.1
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
    
  0.904
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
 0.904
AJR23658.1
Acetamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AJR23689.1
Formimidoylglutamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
AJR22614.1
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.898
AJR26532.1
NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 
 0.834
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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