Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR23918.1Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)    
Predicted Functional Partners:
AJR23919.1
Polysaccharide biosynthesis protein GumE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.783
AJR23920.1
Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.765
AJR26292.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.750
AJR25609.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
AJR26408.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
AJR23917.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.721
AJR24242.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
AJR23921.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.503
AJR24613.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.498
AJR25331.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.416
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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