Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
AJR26297.1Xanthan lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)    
Predicted Functional Partners:
AJR22981.1
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
AJR24365.1
Lipolytic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
AJR26226.1
Acetylglucosamine-6-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.664
AJR26238.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.661
AJR25539.1
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.659
AJR23962.1
Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.624
AJR26516.1
Beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
AJR24196.1
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.566
AJR26554.1
Electron transfer flavoprotein subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.566
AJR25881.1
Xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.543
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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