AJR23962.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

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[Homology]

Score

AJR23962.1

Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)

Predicted Functional Partners:

AJR23594.1

0.936

AJR23598.1

0.932

AJR25391.1

0.923

AJR26359.1

0.921

AJR26303.1

0.914

AJR23965.1

0.907

uxaC

0.803

AJR26297.1

0.624

AJR23524.1

0.615

AJR26237.1

0.607

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23524.1	AJR23594.1	TZ53_07070	TZ53_07580	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
AJR23524.1	AJR23598.1	TZ53_07070	TZ53_07600	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJR23524.1	AJR23962.1	TZ53_07070	TZ53_09745	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJR23524.1	AJR25391.1	TZ53_07070	TZ53_18310	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR23524.1	AJR26297.1	TZ53_07070	TZ53_09635	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthan lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AJR23524.1	AJR26303.1	TZ53_07070	TZ53_09750	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-fructose oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AJR23524.1	AJR26359.1	TZ53_07070	TZ53_12555	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR23594.1	AJR23524.1	TZ53_07580	TZ53_07070	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
AJR23594.1	AJR23962.1	TZ53_07580	TZ53_09745	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJR23598.1	AJR23524.1	TZ53_07600	TZ53_07070	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJR23598.1	AJR23962.1	TZ53_07600	TZ53_09745	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AJR23962.1	AJR23524.1	TZ53_09745	TZ53_07070	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJR23962.1	AJR23594.1	TZ53_09745	TZ53_07580	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
AJR23962.1	AJR23598.1	TZ53_09745	TZ53_07600	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinoprotein glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AJR23962.1	AJR23965.1	TZ53_09745	TZ53_09770	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJR23962.1	AJR25391.1	TZ53_09745	TZ53_18310	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AJR23962.1	AJR26237.1	TZ53_09745	TZ53_07015	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
AJR23962.1	AJR26297.1	TZ53_09745	TZ53_09635	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthan lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
AJR23962.1	AJR26303.1	TZ53_09745	TZ53_09750	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-fructose oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR23962.1	AJR26359.1	TZ53_09745	TZ53_12555	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921