Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJR26303.1Glucose-fructose oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)    
Predicted Functional Partners:
AJR23962.1
Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.914
AJR23325.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.627
AJR26304.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.600
AJR23592.1
Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.595
AJR24820.1
lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.584
AJR23946.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.460
AJR26522.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.452
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.425
AJR23524.1
Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.401
AJR25204.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.401
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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