AJR23980.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene co-occurrence

gene fusions

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[Homology]

Score

AJR23980.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)

Predicted Functional Partners:

AJR23981.1

0.526

AJR26308.1

0.526

bamA

0.446

AJR26453.1

0.437

AJR25854.1

0.437

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23980.1	AJR23981.1	TZ53_09865	TZ53_09870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR23980.1	AJR25854.1	TZ53_09865	TZ53_21010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR23980.1	AJR26308.1	TZ53_09865	TZ53_09875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR23980.1	AJR26453.1	TZ53_09865	TZ53_16345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR23980.1	bamA	TZ53_09865	TZ53_14985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.446
AJR23981.1	AJR23980.1	TZ53_09870	TZ53_09865	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR23981.1	AJR26308.1	TZ53_09870	TZ53_09875	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR25854.1	AJR23980.1	TZ53_21010	TZ53_09865	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR25854.1	AJR26453.1	TZ53_21010	TZ53_16345	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AJR25854.1	bamA	TZ53_21010	TZ53_14985	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.907
AJR26308.1	AJR23980.1	TZ53_09875	TZ53_09865	Glucose transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR26308.1	AJR23981.1	TZ53_09875	TZ53_09870	Glucose transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR26453.1	AJR23980.1	TZ53_16345	TZ53_09865	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR26453.1	AJR25854.1	TZ53_16345	TZ53_21010	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AJR26453.1	bamA	TZ53_16345	TZ53_14985	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.816
bamA	AJR23980.1	TZ53_14985	TZ53_09865	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
bamA	AJR25854.1	TZ53_14985	TZ53_21010	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
bamA	AJR26453.1	TZ53_14985	TZ53_16345	Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816