Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AJR24068.1Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)    
Predicted Functional Partners:
AJR24069.1
Iron transporter FeoB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.991
AJR22555.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.762
AJR24885.1
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
AJR24067.1
RpsU-divergently transcribed; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.717
AJR26422.1
General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
AJR24360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.693
AJR25029.1
Exoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
AJR24888.1
Type II secretory protein PulM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
AJR26341.1
ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
AJR24881.1
Secretion system protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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