STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR24071.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)    
Predicted Functional Partners:
AJR22756.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.665
AJR25928.1
Signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
AJR22411.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
AJR24070.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.542
hppA
Pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
       0.526
AJR25282.1
Prolyl oligopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.509
AJR23951.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
AJR26404.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
AJR23983.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.457
AJR25612.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.453
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.