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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR24081.1Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)    
Predicted Functional Partners:
AJR24083.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.637
AJR24082.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.519
AJR22674.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.495
AJR23550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.488
AJR25740.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.480
AJR24644.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.475
AJR25739.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
AJR25886.1
LytTR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.410
AJR23551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.406
AJR23729.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.402
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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