AJR24113.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJR24113.1

PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)

Predicted Functional Partners:

pdxH

0.641

AJR24108.1

0.554

AJR24112.1

0.526

AJR24109.1

0.435

AJR24134.1

0.435

AJR24110.1

0.404

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24108.1	AJR24109.1	TZ53_10590	TZ53_10595	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR24108.1	AJR24110.1	TZ53_10590	TZ53_10600	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-ACP reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR24108.1	AJR24113.1	TZ53_10590	TZ53_10615	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AJR24108.1	pdxH	TZ53_10590	TZ53_10585	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).	0.739
AJR24109.1	AJR24108.1	TZ53_10595	TZ53_10590	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR24109.1	AJR24110.1	TZ53_10595	TZ53_10600	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-ACP reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
AJR24109.1	AJR24113.1	TZ53_10595	TZ53_10615	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJR24109.1	AJR24134.1	TZ53_10595	TZ53_10740	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
AJR24109.1	pdxH	TZ53_10595	TZ53_10585	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).	0.641
AJR24110.1	AJR24108.1	TZ53_10600	TZ53_10590	enoyl-ACP reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJR24110.1	AJR24109.1	TZ53_10600	TZ53_10595	enoyl-ACP reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
AJR24110.1	AJR24113.1	TZ53_10600	TZ53_10615	enoyl-ACP reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AJR24110.1	pdxH	TZ53_10600	TZ53_10585	enoyl-ACP reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).	0.639
AJR24112.1	AJR24113.1	TZ53_10610	TZ53_10615	Sodium:sulfate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR24113.1	AJR24108.1	TZ53_10615	TZ53_10590	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AJR24113.1	AJR24109.1	TZ53_10615	TZ53_10595	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJR24113.1	AJR24110.1	TZ53_10615	TZ53_10600	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-ACP reductase; Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AJR24113.1	AJR24112.1	TZ53_10615	TZ53_10610	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:sulfate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR24113.1	AJR24134.1	TZ53_10615	TZ53_10740	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJR24113.1	pdxH	TZ53_10615	TZ53_10585	PhzF family phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).	0.641