AJR26322.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR26322.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)

Predicted Functional Partners:

AJR24755.1

0.461

AJR24200.1

0.431

AJR23346.1

0.423

AJR24199.1

0.423

AJR24754.1

0.415

AJR25330.1

0.411

AJR25313.1

0.410

AJR23349.1

0.405

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23346.1	AJR24199.1	TZ53_05900	TZ53_11150	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AJR23346.1	AJR24754.1	TZ53_05900	TZ53_14495	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJR23346.1	AJR25313.1	TZ53_05900	TZ53_17860	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.416
AJR23346.1	AJR26322.1	TZ53_05900	TZ53_10915	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AJR23349.1	AJR25313.1	TZ53_05915	TZ53_17860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.755
AJR23349.1	AJR26322.1	TZ53_05915	TZ53_10915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJR24199.1	AJR23346.1	TZ53_11150	TZ53_05900	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AJR24199.1	AJR24200.1	TZ53_11150	TZ53_11155	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24199.1	AJR24755.1	TZ53_11150	TZ53_14500	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR24199.1	AJR25313.1	TZ53_11150	TZ53_17860	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.635
AJR24199.1	AJR25330.1	TZ53_11150	TZ53_17975	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
AJR24199.1	AJR26322.1	TZ53_11150	TZ53_10915	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AJR24200.1	AJR24199.1	TZ53_11155	TZ53_11150	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24200.1	AJR24754.1	TZ53_11155	TZ53_14495	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR24200.1	AJR25313.1	TZ53_11155	TZ53_17860	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.693
AJR24200.1	AJR26322.1	TZ53_11155	TZ53_10915	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AJR24754.1	AJR23346.1	TZ53_14495	TZ53_05900	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AJR24754.1	AJR24200.1	TZ53_14495	TZ53_11155	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR24754.1	AJR24755.1	TZ53_14495	TZ53_14500	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24754.1	AJR25313.1	TZ53_14495	TZ53_17860	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family.	0.623