Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AJR24298.1LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)    
Predicted Functional Partners:
AJR23034.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.704
AJR25600.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
AJR26403.1
Succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
AJR23926.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.646
AJR25247.1
Ceramide glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.623
AJR25692.1
Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
AJR24281.1
CelD-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
AJR26515.1
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.597
AJR23922.1
Succinoglycan biosynthesis ketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
AJR25881.1
Xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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