Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR24301.1Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)    
Predicted Functional Partners:
AJR24303.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.630
AJR24302.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
AJR22735.1
Protein involved in integration/excision of ICE Tn4371 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
argG
Argininosuccinate synthase; Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.467
AJR23101.1
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
AJR26367.1
2'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
AJR25029.1
Exoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
AJR22572.1
MraZ protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MraZ family.
  
     0.444
AJR24799.1
Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
AJR24360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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