AJR24303.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR24303.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)

Predicted Functional Partners:

AJR24302.1

0.974

AJR22547.1

0.915

AJR24716.1

0.889

AJR23479.1

0.869

AJR24712.1

0.864

AJR22643.1

0.826

AJR23537.1

0.813

AJR25998.1

0.810

AJR23196.1

0.796

AJR25020.1

0.795

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22547.1	AJR23196.1	TZ53_00840	TZ53_04880	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR22547.1	AJR23479.1	TZ53_00840	TZ53_06790	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR22547.1	AJR23537.1	TZ53_00840	TZ53_07165	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJR22547.1	AJR24302.1	TZ53_00840	TZ53_11770	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AJR22547.1	AJR24303.1	TZ53_00840	TZ53_11775	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJR22547.1	AJR24712.1	TZ53_00840	TZ53_14245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AJR22547.1	AJR24716.1	TZ53_00840	TZ53_14265	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AJR22547.1	AJR25998.1	TZ53_00840	TZ53_21915	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
AJR22643.1	AJR24303.1	TZ53_01420	TZ53_11775	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
AJR23196.1	AJR22547.1	TZ53_04880	TZ53_00840	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR23196.1	AJR24303.1	TZ53_04880	TZ53_11775	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AJR23479.1	AJR22547.1	TZ53_06790	TZ53_00840	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJR23479.1	AJR24303.1	TZ53_06790	TZ53_11775	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AJR23537.1	AJR22547.1	TZ53_07165	TZ53_00840	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJR23537.1	AJR24303.1	TZ53_07165	TZ53_11775	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
AJR24302.1	AJR22547.1	TZ53_11770	TZ53_00840	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AJR24302.1	AJR24303.1	TZ53_11770	TZ53_11775	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJR24303.1	AJR22547.1	TZ53_11775	TZ53_00840	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJR24303.1	AJR22643.1	TZ53_11775	TZ53_01420	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
AJR24303.1	AJR23196.1	TZ53_11775	TZ53_04880	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796