AJR24303.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

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[Homology]

Score

AJR24303.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)

Predicted Functional Partners:

AJR24302.1

0.970

AJR24716.1

0.874

AJR22547.1

0.873

AJR23479.1

0.858

AJR24712.1

0.852

AJR22643.1

0.811

AJR23537.1

0.797

AJR25998.1

0.794

AJR23196.1

0.778

AJR25020.1

0.777

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22547.1	AJR23196.1	TZ53_00840	TZ53_04880	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AJR22547.1	AJR23479.1	TZ53_00840	TZ53_06790	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJR22547.1	AJR23537.1	TZ53_00840	TZ53_07165	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AJR22547.1	AJR24302.1	TZ53_00840	TZ53_11770	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJR22547.1	AJR24303.1	TZ53_00840	TZ53_11775	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AJR22547.1	AJR24712.1	TZ53_00840	TZ53_14245	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
AJR22547.1	AJR24716.1	TZ53_00840	TZ53_14265	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AJR22547.1	AJR25998.1	TZ53_00840	TZ53_21915	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
AJR22643.1	AJR24303.1	TZ53_01420	TZ53_11775	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AJR23196.1	AJR22547.1	TZ53_04880	TZ53_00840	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AJR23196.1	AJR24303.1	TZ53_04880	TZ53_11775	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR23479.1	AJR22547.1	TZ53_06790	TZ53_00840	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJR23479.1	AJR24303.1	TZ53_06790	TZ53_11775	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AJR23537.1	AJR22547.1	TZ53_07165	TZ53_00840	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AJR23537.1	AJR24303.1	TZ53_07165	TZ53_11775	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
AJR24302.1	AJR22547.1	TZ53_11770	TZ53_00840	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJR24302.1	AJR24303.1	TZ53_11770	TZ53_11775	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJR24303.1	AJR22547.1	TZ53_11775	TZ53_00840	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
AJR24303.1	AJR22643.1	TZ53_11775	TZ53_01420	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
AJR24303.1	AJR23196.1	TZ53_11775	TZ53_04880	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778