AJR24311.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

AJR24311.1

HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)

Predicted Functional Partners:

AJR24312.1

0.695

AJR24310.1

0.575

rpoC

0.556

AJR24309.1

0.534

AJR24371.1

0.518

AJR26387.1

0.517

AJR25027.1

0.517

AJR25648.1

0.517

rpoZ

0.516

AJR26429.1

0.505

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24309.1	AJR24310.1	TZ53_11810	TZ53_11815	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJR24309.1	AJR24311.1	TZ53_11810	TZ53_11820	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AJR24309.1	AJR24312.1	TZ53_11810	TZ53_11825	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR24310.1	AJR24309.1	TZ53_11815	TZ53_11810	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJR24310.1	AJR24311.1	TZ53_11815	TZ53_11820	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AJR24310.1	AJR24312.1	TZ53_11815	TZ53_11825	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR24311.1	AJR24309.1	TZ53_11820	TZ53_11810	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AJR24311.1	AJR24310.1	TZ53_11820	TZ53_11815	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AJR24311.1	AJR24312.1	TZ53_11820	TZ53_11825	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AJR24311.1	AJR24371.1	TZ53_11820	TZ53_12165	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AJR24311.1	AJR25027.1	TZ53_11820	TZ53_16160	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.517
AJR24311.1	AJR25648.1	TZ53_11820	TZ53_19815	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AJR24311.1	AJR26387.1	TZ53_11820	TZ53_13965	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.517
AJR24311.1	AJR26429.1	TZ53_11820	TZ53_15450	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AJR24311.1	rpoC	TZ53_11820	TZ53_13655	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.556
AJR24311.1	rpoZ	TZ53_11820	TZ53_08445	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.516
AJR24312.1	AJR24309.1	TZ53_11825	TZ53_11810	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR24312.1	AJR24310.1	TZ53_11825	TZ53_11815	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	succinyl-CoA:3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR24312.1	AJR24311.1	TZ53_11825	TZ53_11820	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AJR24371.1	AJR24311.1	TZ53_12165	TZ53_11820	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518