AJR24328.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR24328.1

DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)

Predicted Functional Partners:

AJR26509.1

0.941

AJR25199.1

0.914

AJR24331.1

0.900

AJR24329.1

0.742

AJR24265.1

0.638

AJR25985.1

0.519

polA

0.500

AJR26219.1

0.480

AJR22869.1

0.478

AJR25939.1

0.475

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22869.1	AJR24265.1	TZ53_02885	TZ53_11555	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR22869.1	AJR24328.1	TZ53_02885	TZ53_11910	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR22869.1	AJR25939.1	TZ53_02885	TZ53_21510	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
AJR22869.1	AJR26219.1	TZ53_02885	TZ53_06335	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AJR24265.1	AJR22869.1	TZ53_11555	TZ53_02885	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
AJR24265.1	AJR24328.1	TZ53_11555	TZ53_11910	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
AJR24265.1	AJR24331.1	TZ53_11555	TZ53_11925	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR24265.1	AJR26219.1	TZ53_11555	TZ53_06335	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJR24328.1	AJR22869.1	TZ53_11910	TZ53_02885	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sensory transduction regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR24328.1	AJR24265.1	TZ53_11910	TZ53_11555	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
AJR24328.1	AJR24329.1	TZ53_11910	TZ53_11915	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AJR24328.1	AJR24331.1	TZ53_11910	TZ53_11925	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR24328.1	AJR25199.1	TZ53_11910	TZ53_17150	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJR24328.1	AJR25939.1	TZ53_11910	TZ53_21510	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
AJR24328.1	AJR25985.1	TZ53_11910	TZ53_21815	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AJR24328.1	AJR26219.1	TZ53_11910	TZ53_06335	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AJR24328.1	AJR26509.1	TZ53_11910	TZ53_19185	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR24328.1	polA	TZ53_11910	TZ53_02645	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.500
AJR24329.1	AJR24328.1	TZ53_11915	TZ53_11910	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AJR24329.1	AJR24331.1	TZ53_11915	TZ53_11925	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664