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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR24399.1uvrD/REP helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily. (1052 aa)    
Predicted Functional Partners:
AJR24400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.949
AJR24199.1
Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.856
AJR24754.1
Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.856
polA
DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.538
AJR23345.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.513
AJR25331.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.513
ligA
NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
 
 
 0.450
AJR25544.1
DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.445
AJR24396.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.429
AJR25818.1
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.426
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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