AJR24413.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Gene Fusion

Cooccurrence

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[Homology]

Score

AJR24413.1

Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)

Predicted Functional Partners:

AJR22767.1

0.527

AJR26106.1

0.521

AJR24412.1

0.513

AJR24754.1

0.494

AJR24199.1

0.488

AJR24200.1

0.412

AJR24755.1

0.407

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22767.1	AJR24413.1	TZ53_02240	TZ53_12430	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AJR22767.1	AJR26106.1	TZ53_02240	TZ53_02235	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
AJR24199.1	AJR24200.1	TZ53_11150	TZ53_11155	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24199.1	AJR24413.1	TZ53_11150	TZ53_12430	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AJR24199.1	AJR24755.1	TZ53_11150	TZ53_14500	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR24200.1	AJR24199.1	TZ53_11155	TZ53_11150	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24200.1	AJR24413.1	TZ53_11155	TZ53_12430	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJR24200.1	AJR24754.1	TZ53_11155	TZ53_14495	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR24412.1	AJR24413.1	TZ53_12425	TZ53_12430	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
AJR24413.1	AJR22767.1	TZ53_12430	TZ53_02240	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AJR24413.1	AJR24199.1	TZ53_12430	TZ53_11150	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AJR24413.1	AJR24200.1	TZ53_12430	TZ53_11155	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJR24413.1	AJR24412.1	TZ53_12430	TZ53_12425	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
AJR24413.1	AJR24754.1	TZ53_12430	TZ53_14495	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AJR24413.1	AJR24755.1	TZ53_12430	TZ53_14500	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
AJR24413.1	AJR26106.1	TZ53_12430	TZ53_02235	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AJR24754.1	AJR24200.1	TZ53_14495	TZ53_11155	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AJR24754.1	AJR24413.1	TZ53_14495	TZ53_12430	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AJR24754.1	AJR24755.1	TZ53_14495	TZ53_14500	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
AJR24755.1	AJR24199.1	TZ53_14500	TZ53_11150	Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793