AJR24416.1 protein (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJR24416.1

Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)

Predicted Functional Partners:

AJR24415.1

0.970

AJR26114.1

0.697

AJR24599.1

0.604

AJR24428.1

0.481

AJR24422.1

0.466

AJR24427.1

0.464

AJR23546.1

0.400

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23546.1	AJR24415.1	TZ53_07230	TZ53_12440	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJR23546.1	AJR24416.1	TZ53_07230	TZ53_12445	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJR23546.1	AJR24427.1	TZ53_07230	TZ53_12500	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJR23546.1	AJR24428.1	TZ53_07230	TZ53_12505	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJR23546.1	AJR26114.1	TZ53_07230	TZ53_02545	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlgJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
AJR24415.1	AJR23546.1	TZ53_12440	TZ53_07230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJR24415.1	AJR24416.1	TZ53_12440	TZ53_12445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJR24415.1	AJR24422.1	TZ53_12440	TZ53_12475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR24415.1	AJR24599.1	TZ53_12440	TZ53_13565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Vgr related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
AJR24415.1	AJR26114.1	TZ53_12440	TZ53_02545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlgJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AJR24416.1	AJR23546.1	TZ53_12445	TZ53_07230	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJR24416.1	AJR24415.1	TZ53_12445	TZ53_12440	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJR24416.1	AJR24422.1	TZ53_12445	TZ53_12475	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR24416.1	AJR24427.1	TZ53_12445	TZ53_12500	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
AJR24416.1	AJR24428.1	TZ53_12445	TZ53_12505	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AJR24416.1	AJR24599.1	TZ53_12445	TZ53_13565	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Vgr related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
AJR24416.1	AJR26114.1	TZ53_12445	TZ53_02545	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar protein FlgJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
AJR24422.1	AJR24415.1	TZ53_12475	TZ53_12440	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AJR24422.1	AJR24416.1	TZ53_12475	TZ53_12445	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR24427.1	AJR23546.1	TZ53_12500	TZ53_07230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400