Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJR24464.1Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)    
Predicted Functional Partners:
AJR24465.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.922
AJR25760.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.880
AJR22635.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.820
AJR24924.1
Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.820
AJR24925.1
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.819
AJR25254.1
WalW protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.819
AJR24931.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.808
AJR24929.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.800
AJR24930.1
FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.799
AJR24932.1
Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.798
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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