Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AJR24521.1Polyisoprenoid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0312 family. (412 aa)    
Predicted Functional Partners:
AJR26375.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
AJR25018.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
AJR25148.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0312 family.
 
  
0.533
AJR24520.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
AJR22850.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.498
AJR25609.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
AJR26021.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.441
AJR26367.1
2'-5' RNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.431
trpC
Indole-3-glycerol phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TrpC family.
     
 0.423
AJR24013.1
Pirin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family.
 
   
 0.417
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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