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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR24603.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)    
Predicted Functional Partners:
AJR25930.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.879
AJR25931.1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.864
AJR26129.1
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
AJR23807.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.517
AJR24134.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.469
AJR23149.1
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.441
AJR26044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.441
AJR23496.1
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.439
Your Current Organism:
Sphingobium sp. YBL2
NCBI taxonomy Id: 484429
Other names: S. sp. YBL2
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